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CancerDetector is a software package for ultrasensitively detecting tiny amount of tumor-derived cell-free DNA out of total cell-free DNAs in plasma.

CancerLocator non-invasively diagnoses cancer using cell-free DNA methylation profiles, identifying tumor presence and location. Available on GitHub under MIT l

cfSNV is an ultra-sensitive somatic SNV caller for cfDNA sequencing, available as an R package and Docker image on GitHub.

CODENSE is a software package to mine coherent dense subgraphs from multiple biological networks.

DiseaseConnect analyzes disease connectivity with omics data, GWAS, gene expression, and literature. It includes drug-disease relationships and co-morbidity dat

Hi-Corrector removes biases from chromatin contact matrices. Fast, scalable, and memory-efficient, it's available on Zhoulab GitHub.

iArray integrates and visualizes multiple microarray datasets, enhancing signal-to-noise ratio and biological insights.

Translational Genomics & Bioinformatics Lab members in the Department of Pathology and Laboratory Medicine.

Mining Overlapping DENSE Subgraphs efficiently identifies and discovers overlapping dense subgraphs. Download the MODES v1.1 manual and executable package here.